NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10078100

Scaffold Ga0315274_10078100


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10078100 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4360
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0315274_100781001F036240N/AKRKVGRNFTNAVASGTLEKSLAYRLQIKGQSINISVFAKGKASQYFLARENGRRPGATPPPVSAILDWMRIKPIKLRDKESGKFKKPTETLKRQVAFLIARKIGRDGIKGWKAFDYAYENIWDEYEAKVVEAYGKDFNAVLENQLKDIK
Ga0315274_100781002F028175N/AMAITIDDQPYEYTPVGQRLMLVASSTNVANAGFRFVFDFGSFTVNVQPNAQNKGMLDLAPIFREALFHEPSLITTAFDVDQKSVASITCVVREGWLVDGVFEISGTGEAAINDVYAFLAEYQVADGYKPKPEYRYGLIDIFKYVMSERTTDTHKWSEAAVRGLSSDYVYIPTRVADYGLLYAPSSTTLLADSDFDIAVYSSYDNDDVLIDTKFLTMDNDPSIVNVVGAFYANVAVNGIVDLTGAKYYTIQFGKEIAFPVYTPASRMYCFYLVDDDCRFDNVRLGWTNTCGGTDYFNFTKKSELSFNYDRKQYQKIVGSYNESTFDFNTYDRGMTDRYVTTTKGLQINSDWVSVGEFQLLQTLCRSNDVFIINDDGTMTPVLIDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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