Basic Information | |
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Taxon OID | 3300031999 Open in IMG/M |
Scaffold ID | Ga0315274_10006845 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16571 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (13.79%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5119 | Long. (o) | -110.3577 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012010 | Metagenome / Metatranscriptome | 284 | Y |
F057296 | Metagenome / Metatranscriptome | 136 | Y |
F069688 | Metagenome / Metatranscriptome | 123 | Y |
F083779 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315274_1000684516 | F069688 | N/A | MEKVNNIFTVDTVTIDGSYIKLTGVYQIPESSPFERGDILTEDKYNGHQIYVSFGTKDKDGKDGLILDTRSMHPAIKKSLDTVTLGLNLFKIED |
Ga0315274_1000684518 | F083779 | N/A | MAKMIFNKEETKNLIMMLKSEDADNHIIAFETLKNVDFKKYTGELLVLYKFGGHTMENWMLNCKKIATKLLDIKPETPLSSPKTLSLITKNKGSKASVELFMEFFIRDMTRMLESIGYPTDQFEIHIKLKDDGQTAKS |
Ga0315274_100068452 | F012010 | N/A | MQEIFNKLIKEDLSPNTYYILHCIKEKIVPNNFVNPGIESKRLQNNEWLNEDLQLTNKSIIFIEEINSFFKKSKNTTSKNLMGDEFLIKIQEYVEIFPNKKLSSGKYARVNIKSLEGPFRWFFETYNYSWETILVATEKYVTEYSLKNYEFMRTAQYFIRKQESDKNFISDLATYCEFISTGGDAETFYFKENIV |
Ga0315274_1000684529 | F057296 | GAG | MMLLQASWQDQQTFRMIPVTENCPYVECIFDPSTKVFVVISKIKKTTLHMLPKLDEYGQAVTGVKGTKQERHKLEVFQ |
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