NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10002977

Scaffold Ga0315274_10002977


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10002977 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25206
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036100Metagenome170Y
F054678Metagenome139N
F083741Metagenome112Y
F093300Metagenome106Y
F100665Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_1000297721F054678AGGMVDTKKTIIVENVLVKGYIKHANGKKTMFEFNKQDFKPASFEKIFEEVGNKF
Ga0315274_1000297723F036100AGGAMEFTHAVVDDGDIIRKYRWSKREAKWYKDSHPDLNVVELPKEKVKPFNTNDYEEAPY
Ga0315274_1000297734F083741GGAMTDKEQLEAVYAGMAMMGYLIRGAPINKIPGDAKAMAKAMMEEEATVGLPAIKRRTRK
Ga0315274_1000297735F100665GGAGMRKPYIKVVSIKDTKDGDCKLTLDMNQAGREVILQAGIQKALADYTVANSKKLTFWNKLQICWNILK
Ga0315274_1000297742F093300GGAGGMKRFLVLAEIEMEDAQYIDLEKKTIEQTEFITSVLADHGRNRGLKIKMRCMENEYNLLDDVCRSADAIAKDKAYDELGEAMLSNVMCPSGNCEA

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