Scaffold Ga0315274_10002977

Overview

Basic Information

• Taxon OID: 3300031999
• Scaffold ID: Ga0315274_10002977
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25206
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5119
  • Long. (^o): -110.3577
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036100	Metagenome	170	Y
F054678	Metagenome	139	N
F083741	Metagenome	112	Y
F093300	Metagenome	106	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315274_1000297721	F054678	AGG	MVDTKKTIIVENVLVKGYIKHANGKKTMFEFNKQDFKPASFEKIFEEVGNKF
Ga0315274_1000297723	F036100	AGGA	MEFTHAVVDDGDIIRKYRWSKREAKWYKDSHPDLNVVELPKEKVKPFNTNDYEEAPY
Ga0315274_1000297734	F083741	GGA	MTDKEQLEAVYAGMAMMGYLIRGAPINKIPGDAKAMAKAMMEEEATVGLPAIKRRTRK
Ga0315274_1000297735	F100665	GGAG	MRKPYIKVVSIKDTKDGDCKLTLDMNQAGREVILQAGIQKALADYTVANSKKLTFWNKLQICWNILK
Ga0315274_1000297742	F093300	GGAGG	MKRFLVLAEIEMEDAQYIDLEKKTIEQTEFITSVLADHGRNRGLKIKMRCMENEYNLLDDVCRSADAIAKDKAYDELGEAMLSNVMCPSGNCEA