Scaffold Ga0315278_10000630

Overview

Basic Information

• Taxon OID: 3300031997
• Scaffold ID: Ga0315278_10000630
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31177
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (65.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315278_1000063021	F055453	N/A	MKIKEFLGESATDVVARFYKEASADMDKFYNPEDVKYKNQNKEYYDEHFKQWFSEEVVPVFTKPVTKPQAEYTNMPKQGKLQSPGYRGLQYALAAANLPYNHNVQAYKPDPQRVLAAQTMDGARNNNGQ
Ga0315278_1000063025	F071209	AGG	MDKNTYVPMNELIRDKDTSWTFTHINLPYHEIASRGIVIWCVQNLEGRWTMLGGNKFGFEDAPDATMFRIQFGLGA
Ga0315278_1000063036	F097281	N/A	MNKQTTPKATPVNLKEQNAAHTFRVTIRDREHFYKLVNWLNANVGKGEDKWTMEGRVLKTLKGGKSVSPKIYIFKQDFDPASSLYLSLL