Scaffold Ga0308176

Basic Information
Taxon OID	3300031996 Open in IMG/M
Scaffold ID	Ga0308176_10013296 Open in IMG/M
Source Dataset Name	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031996 Open in IMG/M

Scaffold ID

Ga0308176_10013296 Open in IMG/M

Source Dataset Name

Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5878
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5878

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.8864	Long. (^o)	-122.2981	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.8864

Long. (^o)

-122.2981

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308176_100132962	F014022	N/A	MLDEDKQVGNMAEAAARAAQPYRRHIVGLPLQRSLFGQAARAATTIGLPGLTSELDFPARLDENGDLFLDGSQVATLSKALPAWFTPETLELMHTRHAAACDALVNASENAARGAASLDRAARELSQDLADKMALVLAYGVLSKFVPDVLLRALADAGDVEPPPFPETSAGAELMQDMFALYQDCRALDYTPQRLQREWPRVSPQVFQLVAEFCNRQSGFGPLAWDSPGHEDPDYVVRLLHSAFDSLDAEQVRRRFSFANRPALARSSTGVSTEVTALRRVLGFWLDFLEWETWYVRRAFYVGMIPLLRQLAAGYRHEMPAFQVADLLFLDIRELVAGIADPAVIHTRRHRYMENSDYLSFHGIDPGRLATILEGS
Ga0308176_100132963	F010880	AGAAGG	MSYALKKGTTSKILLIYALDGTDMRLGKTGLSARTPDSSAAYIREGESQARRITLIEGKLGEHRPGSFVEVDSKLLPGVYQFGVPDEMLAAGAQTVTLMLNFPGAVIEPISIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGDAR
Ga0308176_100132964	F008444	AGAAGG	MPVPHAYTMKAGTKSKLLLVYATSADSTSGKVGLGKDLSAGSAAYIREGDAAARQIPIVKGRLGEWASGSLAEVDPELLPGVYQFGAPDDMVTEGSARAVLLLRFPEAVIKPIEIHLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELELGEQAEKELAAKMNVKKEP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308176_10013296

Overview

Ecosystem & Geography

Associated Families

Sequences