NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1005999

Scaffold Ga0308403_1005999


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1005999 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3188
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F075533Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10059991F075533N/AGDLWEYESVASSGNIVVQIRTKKAFTISNTTLFFLTYLFDQPQRYIKLENNERIFVHQVTSTGLADGVLVAPVTSIVQTSTYQLILGTFTGLSTGGNLTAPNSFGWIIGVNAAGNETTVGTTSVSFRAEINDLQFGSIDEEKLTIALNERGGCCTIHLPSASSVSLTKPDANLRDIIENADGNVVRYHRKRFLRDRPKTVIDLREDSTLVWRFPETTRVVDISKAPNRIYGQYPGYWADYLTAMTTIQSLETRRHLAKRFASVGEYDTKAIADTRRNEAAVALDRQIAPLAVELDNTRYELMLRSGETVPNWAADVSDYAIVPGYYYRNAKITARTITRERTTYTVSFNPDDFVTALR
Ga0308403_10059994F007404GGAGGVDIIEILQLMAAGHSGLTALDYVWNAVFGAIGAATAYLADNEGAVLLPRYDRERHSVELGALGRVLTGAGAGVLVGYSGYIPFIAGVVAPTLLPVLVDKIAGFVGRGRK
Ga0308403_10059995F014738AGGGGGMKLDVLLMISAFVLAFVHPDAAQVAATAVVLLLVVRIERGRKAGKRKAPQRG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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