Scaffold Ga0308403_1000186

Overview

Basic Information

• Taxon OID: 3300031980
• Scaffold ID: Ga0308403_1000186
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26211
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (92.31%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F006252	Metagenome / Metatranscriptome	377	Y
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F010840	Metagenome / Metatranscriptome	298	Y
F016100	Metagenome / Metatranscriptome	249	Y
F044842	Metagenome / Metatranscriptome	153	Y
F048124	Metagenome / Metatranscriptome	148	Y
F067304	Metagenome / Metatranscriptome	125	Y
F075805	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308403_100018614	F010840	AGGAGG	VNLPFSQPLDKVTFGALAAATVIILTWALREFAGIELPAEVQSALAVIFGYVVSYHIPLTEAEAEAIARKYYKYK
Ga0308403_100018616	F006418	AGGAG	MPKRRSAPKPRPEREIVIAEGADYKIVFDRETRDYAVEYRGQPVGWRAYVEDARRLVEQLRYEDARRGE
Ga0308403_100018618	F007976	AGGA	MSSTELSNFLRVALDIQATPFSGVHVDDGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLEALAEATWIGSIEVDGNRVTATAQTTRYEENVGEVAGEYCDVSLPEFYCPRAPVARMLGFLHDESRGWVQIVENPRLKTVKEASAKDYVALVDDPRNGGELFRPKEIDDEHWYSVAQLRKGLRLFGKNSRLSVRRSSSGWLAFGDQWGYTFAVTPFIKHN
Ga0308403_10001862	F067304	N/A	MRCDQRLVPPLRAQRRKMLRDAPERLTIKRVGRAVVDVSTQHQFCVRCGQRREVEQT
Ga0308403_100018620	F075805	AGGAGG	MRVRVWHGWRGVHGNRDVSQFVWIEFDGEPLGSLVVEVDEDRTDEREFYRLYDGRLVVAEHRYGDWEKGGVDYGVVSVYADLDDAARRGWRDDLVRIGAYDAPTLELDEWLSRYEEEE
Ga0308403_100018622	F048124	AGGAGG	MATISIWRGYRHWNWDEENDYETVTYEDAEEIGAVRFEDENGDIQYRIIRWCEGIVVFFVKREGHYCEAEIFEYPDLEAAAKDYAFVLRKAGVI
Ga0308403_100018625	F044842	AGGAGG	VEETELWCGVRGNTFQSTQCVRFVGEFLAVVDVARADEWVERCVLYRTEDGRVAVHQMRLSLLDDGIDIAEAYILPALDAGEGVREQR
Ga0308403_10001863	F004791	GGAGG	MDKPAEIYDIEAIRVDRNALTIRDAASVLNNELNAPVAARLVRKAIGTQADRFPLRALKAVYERVLPQIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSVAEEGNE
Ga0308403_100018635	F006252	AGGGGG	VRSFDEQAAFGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGEQPVAALEVKRRSVRSDTYPTTIIPQSVVDAAKRLTIPVFAAILFLDGLAVFDVLRTPSSVRWLRTRRGVLRKHREYDISERLVKVEEVHQRQRRSA
Ga0308403_100018638	F016100	AGGAGG	MVTSVKVERFKEYSELVRVLSRSEACPATNKDIIRPLNYELLVGTHVPEPDCHRLGALVVVLFRSFAVVDVEIWQTDAGVWVADALVDFGDRRRLRRGEGDAPLQAVIELITDIQRY
Ga0308403_10001864	F005302	AGGAGG	MSHSGVIAGLYAGNYAVEISTDGTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDHATVTVGKREPVELTLTFLYNEASNSAANTVFDRFQSATPTLAVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPGDAEPYVAMVTVRTPSLRQYTLGNDPTNLS