Scaffold Ga0308420_1002136

Overview

Basic Information

• Taxon OID: 3300031966
• Scaffold ID: Ga0308420_1002136
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10272
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308420_100213610	F024322	GAG	VWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQQDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308420_100213611	F007033	GAG	MQCRCSQPLWALGIPDCHPVLRPIRRIAFETALGPSSNPADFALGNSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRASPVSAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADASLLNHVPGIAARLQSVFTGSRLNVFAYALYSRGAGDLYIPITGLASDLELRNNAGTPITTNFTEVSPGIYESDPLTLPPSGNPYTIRVGRGALSGAFDYTTAVAQFNV
Ga0308420_10021365	F023603	N/A	MLYTTADFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPESVEKIYAALPSSAPAVGVRNVLRALALPFIFGRIKMGVGSSMAGEPNTQGYTRIGYTPYLAWRGSETLRRLMLFAPFVVQGELAAPTATIPYPSPTPQAPDFVAIGDPVRAYTATGEVQTSVVSVTAADITLASTLPAGPVRVIVENLRIRIRRAYLTF
Ga0308420_10021367	F038584	N/A	MTEEIKQIQKAAEELTATLHATAATEEELKTLDAISKAAAHIRQQLKERMPSAGTRIKVSDLRSARKLMQRYVQKTIVGANTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGQVKPEMPTTPQRVTSNYQKIAFSDVITDEVLLAYPDIVDFLIWHGAYRLEVFLHNALVTLLSGVASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWLANAAIVPFPYYWALVFGALKSTTGEYLQLDRQLQGLSLIPAGAAQTAPTIVFNENELEVFFLGDITVNFGRVLDVDSDRNARRLSMDLFYAPLPHTGRPVIVANTQNAINSMA