Scaffold Ga0326597_10044052

Overview

Basic Information

• Taxon OID: 3300031965
• Scaffold ID: Ga0326597_10044052
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5618
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063430	Metagenome	129	N
F068627	Metagenome	124	Y
F068642	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326597_100440526	F068627	AGGCGG	VSVGERKAPLRLENSPTTEGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTLRWQHSDIMAHIDARRRSR
Ga0326597_100440527	F063430	GGAG	VGRARPDLITVLEENPPGPNAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRCGISTIQLAELRRFRREYLEGGKGGRLRRGAGRARRKA
Ga0326597_100440528	F068642	GGAG	MRVRSVLRMPEALRRHNEEQRRDPEDVVSDLSRRVRVVVLWRQRDDDPERWIYLERMVPGEFSYETVKQRWGGGAYRIRLFGAWDRSRRQERYITQVAFWIHRGFPPTPALRARLRAAATVDGGSEPGLRHLN