Scaffold Ga0326597

Basic Information
Taxon OID	3300031965 Open in IMG/M
Scaffold ID	Ga0326597_10005341 Open in IMG/M
Source Dataset Name	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031965 Open in IMG/M

Scaffold ID

Source Dataset Name

Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17869
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

17869

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (73.68%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	42.9888	Long. (^o)	-108.3994	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

42.9888

Long. (^o)

-108.3994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F023552	Metagenome / Metatranscriptome	209	Y
F047082	Metagenome	150	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0326597_100053413	F047082	GGAG	MIQYFRSRRLLRMSCCAALVIYLAPAAFAQSPDKIARDVIDQAAAHGTVLVLVGLNVPWQMESRLSEDSTRAQRRAIASIQSDLLINLEGTNYKIVRRYQEIPGIALEVAADALAELARLSIVTNVLLDRPVRSAVPPNLRSTPQSGTITALVNTDKVPSNLFRRAARDGTVLVLAGLRTPWQREDHLSEELLTLQRSAIHSAQSYVLAELAGTSYKVTRLYGKIPGIALRVGVDALIILEKSPAITNVVLDRPVQVKQ
Ga0326597_100053414	F023552	AGGAG	MASQIDGRDGARDLVTRGADLAEEGSGPSLRSLKQELKTLRTRSKQRQGKKTTKLERARKLHDAVTTLVQELKDNAFTSVLSRPGAVTIIGPEVDDPKTDGRIGHVREPLGLYIQRLSVKDNFFQRPPFDHMTDPIYRRLIRDFIEGAAMPESKIAAIGWAGGVRSLTDANIRYSIIDGLQRLYCFLIAILLVWRREQLVRDGIVPEEGWNFVAESVKKLGEPRSATDALLQRVIRYEIFYGIGLAGLLHYMVTFNSSQRRMSLRVQLEIMKRPLIEHLKVEGIPIWEDLGRMPGEPRPKDKFLASDIVMATQAFITHNAHVTTAVETERFLDENQPYLDNIGDITDIVRTLKRISAEVHPKLALAYEADAAFRYIMLHGDPFLLGFVAACGYVRNRGGMEILDKALDRLVSEFNRRGDDPLDIESYQQALAVIGASRGKEARRLVDDTVRRFFLGVTMELDWLDTACQITGVAER

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326597_10005341

Overview

Ecosystem & Geography

Associated Families

Sequences