Scaffold Ga0315901_10684700

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10684700
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F018535	Metagenome / Metatranscriptome	234	Y
F041172	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_106847001	F041172	N/A	MAKLKTAILRAQETAEITGANENLLWQARDALSDAINNPEPDEGLTSAERALHLINTYLMESELCKR
Ga0315901_106847002	F012570	GGAG	MQTIKIDGTTYKVKFDRDPVELAKAARKAWKPAKPKDLRKFPTWTPTVSTADYIRRFDALNFLQSVNYTGASTESAAQYDPTMPLFEVIDENAN
Ga0315901_106847003	F018535	GAGG	MKTQIDTSAPWWPAHLWPYTYTHGHTELLCFVDYEPGDRSVGMAAGAWLIHAFAGGVDVVDLLKDPIIKDIEAEAACSLSSD