Scaffold Ga0315901_10173199

Overview

Basic Information

• Taxon OID: 3300031963
• Scaffold ID: Ga0315901_10173199
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1898
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F018171	Metagenome / Metatranscriptome	236	Y
F085372	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315901_101731991	F085372	N/A	YTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR
Ga0315901_101731992	F005024	AGGAG	VRPVVNMTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGAPLGNINRKDRKTGKKVGRSRIFRRVHLIAQAREAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSAIYNTAMQKAMDDELVELTNHMTEAILANGKVLEDNGIAIK
Ga0315901_101731994	F018171	N/A	MANTQGSKYIFGSPATLELYDAAGGLVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANAKLSAALPDVNGTCIISGAPVIEMGGYIDAINAVTGNRWIYAGGGS