NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10000110

Scaffold Ga0307479_10000110


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10000110 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81509
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (83.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F000978Metagenome / Metatranscriptome815Y
F001854Metagenome / Metatranscriptome626Y
F007325Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_1000011017F001854GAGLKTPFFAVLFLCFTLSVVVALSQDAPNQAPKTPADIGARLTTIMGTVQEDGERLRFVTEQRAWKVNNPEVLNGHEGHYVHAEAYLYPDKNQIHITEVKIPTARETREADIK
Ga0307479_1000011025F000978AGTAGMFAQTVGVKPRQKSSAQRICFCPQCAVSLAMGLPPEGALNMAAWDMIRDLVSAEPSLNEAAWESLRGVVALLGSGDDDSGRGLETSARFRRAG
Ga0307479_1000011049F000595GGAGMDGITGLAAVVMIFGAPTAILGMYTFYRVRKLRTEERLAAIQRGVNVPMEPELSEGAKSRRSGILFIAGSVGYMIAFSIVAKFEPDAMMAGAFGAIPFTLGLGFLLDSVLIRRDTARAA
Ga0307479_1000011074F007325AGAAGMRGMRYLFLSCGVVILTAVAAAMTARAAPPATEPTVDDLKARLSSANTGDKAHLCIQIAQLQLTETDKLYAAADTEKAQPALTDVVEFSEKARDYAIQSHKNQKQVEIAVRGMTRKLTDLMHSLPHGEQTAVHDAITRLQRVRDDLLIAMFPKGAK
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