Scaffold Ga0307479

Basic Information
Taxon OID	3300031962 Open in IMG/M
Scaffold ID	Ga0307479_10000038 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031962 Open in IMG/M

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	146182
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	90 (62.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

146182

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

90 (62.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F001885	Metagenome / Metatranscriptome	622	Y
F002692	Metagenome / Metatranscriptome	536	Y
F006428	Metagenome / Metatranscriptome	373	Y
F006799	Metagenome / Metatranscriptome	364	Y
F049124	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307479_1000003813	F006799	N/A	MHWIAPRPANMHLALQNAETIHRLVEQGEFLLKTFHEEHQKDPAGLETEFARGELIGWRATLHTLYRDYAEDIVKRVIARTHLTIPVSEVPCGAIHAH
Ga0307479_10000038138	F000136	AGGA	MSTSKAAKLRILYGEGEAEAQAAPAAAFEQAGHTVHKAIGRKAAVEALQKGSFDLVVLGPSLTRNDRHHLPYVVKKAQPETAVLVMHADGSRHPYVDACTDTGASVENVLARIEGMKIAGVLSARAAAGR
Ga0307479_1000003823	F001885	AGAAG	MSQEFLSVAIWEPLPGMEAASLETIRELNSLVSRKQYGRDLLYCAGNSQYVLLRYWNSEEARSAAQEDPEVLRCWARLGNEIKILKVYEKLEEVGV
Ga0307479_1000003840	F002692	AGGA	MSRLAMALIAYAVLGALAFATLTDFRIRSLTLLILGLFAFKSWVRRKDVLHPDGESDPE
Ga0307479_1000003861	F006428	GGAGG	MRKALWISLFVVTLLSALPGFAQNPNYEVGPVWRVVYYQIKPGQGEAFWKDFRENLKPSYEALKKEGILRDYKVWTNVTTENAHDWDVALGLMFPNWAALDESDAKTATIIAKHYGSREAMIEAGKKRNELREVVASKLAHEVMPK
Ga0307479_1000003898	F049124	N/A	MERPVSVTVIASLFFLVAGYLIAVGIIELFVPGTLSMTRGIGITYGRELNGPQTALSVGAGWALVGWGLYRLRNWARWCAMVLMVIGVAGSVPAVSAAARDLTWRFFFYGAQIMVRIVIAWYLAASPEVIEAFVSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307479_10000038

Overview

Ecosystem & Geography

Associated Families

Sequences