NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10500307

Scaffold Ga0315294_10500307


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10500307 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1112
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020137Metagenome / Metatranscriptome225N
F039505Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_105003071F020137N/AFCASSAMTAHPTNIEAAKLLREHWPTCSSWTEDQILNWIGIFSSKKLFGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPEGHIAWIEIAIGTEPYAVQTLWLAMMRLCSKNVTKLGGLRKGINRLYDFDRYFKLIMNERISYGRII
Ga0315294_105003072F039505AGGAMGASYEAPNLAAANKEAVEAQAETYPKLRALDAAARLGRSITYDGKEYDFSGKQVDAKGNPLRDANGDIIYKPIGDVQIAETFARAAAAIAPELTGNQLKLAQEYGTKFAQQRRSELEALDPRKFDLYEQFLSDVKGDAAAPDTRVESPTYERVGMPGAQQDTGASQLIRSELERQIQQGLSQVGTLDPSMERRVQQAARARGSSIGNVLGNPSALRESLAIQDALG
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