NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315294_10173834

Scaffold Ga0315294_10173834


Overview

Basic Information
Taxon OID3300031952 Open in IMG/M
Scaffold IDGa0315294_10173834 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2164
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5395Long. (o)-110.3891Alt. (m)Depth (m)61
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014606Metagenome261Y
F100667Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315294_101738342F100667AGGMISIFSDTSKLEYALARLADAAKVDLGLVVKQEAAYVAKAIMQITPPTGDKTKKGATVATVTGGEITKTKASGLSTNAKKQGENAILGDLFGGRNMGKEKSIGLFQRIGNSTEVPPRGGQHETMGVNLGWEASKKIRIYRKFWVKSASVPQMKAFHYANRNERGRPRQVTRSLIGRWAVQDQMWVSNQAANRYLKYTQKKVGLAKAGFAAAAMACGVRVPSWIRRHMAKAGNAQVHFGANPFVVARTTGNQIPDLQRVVDSALKIRYKITISKTRAILANRAVNLGFARVKGGMVIPKET
Ga0315294_101738343F014606N/AMSTRTNIRTATANALTGALVVPTANILRGRNNTIASISFPAAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFIAESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLNSVDYVIEPDEDKRFGTARHTFNCIYLTTD
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