Scaffold Ga0315294_10134764

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10134764
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2524
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F007570	Metagenome	348	Y
F013404	Metagenome	271	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_101347641	F017612	GGAGG	MSIPDTDMHIGDLYEETLAKYSSGQLKKDGLIMLPEEALQYFINKAREEGFTDDMIENSAEELLYDLEDVEEDKYKQYLEEQE
Ga0315294_1013476410	F007570	GGAGG	MNEDITYIKQYIKTFNDRRLKEEYNLYTSLEKPTILENYFKDFIKQEIFTRGIGV
Ga0315294_101347644	F029676	AGGAGG	MSHKNRMFYNYMTTLDAWDEYLGLLKDDDTFADIWKDTENDFDEWCEAHDIVLVDTQERASQLEEAQLE
Ga0315294_101347646	F013404	GGAG	MMIDIKLENAIQKLDDTFTKQKSIANKLVAEHQKLQQALANMLVNADEDCPKQYRTEHFCRAIDDGYSLLKTIGYFRKRVK
Ga0315294_101347648	F003803	AGGAG	MKKDKTLLRFRIYDGDREYTDYAIIDKKQRIAFDDKEIISKFFYDNDVSKEQFLSDGRAVRIESEIPITDVDVKNLESLSMAYLHDFKLEEVA