Scaffold Ga0315294_10007976

Overview

Basic Information

• Taxon OID: 3300031952
• Scaffold ID: Ga0315294_10007976
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11626
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052399	Metagenome	142	Y
F079632	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315294_100079765	F052399	GAGG	VAACYMSKPDDTEKTYLDEDPAFYDDGPAERRASSHATFGGNRVWQDFGAKDVDRQIRLRTHWMTQSTLDALKAKFAQVAKVWKWLDHRGHEYRVFFRALNPERIRGHDAYRVEMLLDVVQVVA
Ga0315294_100079768	F079632	AGGCGG	MPGRPHRRFAKVADNMTDTGSVSKAPSPDEVVMPQERRFQVGEREIIVRPLVIGDFKRIAADLGALAQRVAREHPEIDLAKPDEHLEAIFPILGEAVGRLFQRLFGVEESYLDEHLTLAQAAQIIAAALEVNQLPDIRKNVGRALQLAKATAIP