Scaffold Ga0315904_10646438

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10646438
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F013517	Metagenome / Metatranscriptome	270	Y
F045692	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_106464382	F002738	N/A	MLVTAMSIDTYGLPSEQYEEFFENNVRFAAQLYLKTCNIISAEGAGNVDFKTVLDMYQEAVYATNDDCRKYQKANNPEAIKDTDVFGIYPSREDMIEEIKAVSAKVEALTEYVTELVKVTTKGLEGIAENLVD
Ga0315904_106464383	F013517	N/A	MFESLFAAVFPVMKDLLWAAAGMLLTYAINKFQTQFN
Ga0315904_106464384	F045692	N/A	MTQLTQAKLKDLNVLKLYEHYDALEKSLPLLTPESQELAKAELEACADLRSEKIDRIYYAIASHEDA