Scaffold Ga0315904_10499037

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10499037
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1074
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F005558	Metagenome	396	Y
F027417	Metagenome	194	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_104990373	F027417	AGGAGG	MSYDYRVTFVTDYLTITTNVCLELDDTIGNLSDEAYGQATINGMNNIEDEIGKIDETVINDITVTLLLDEEEIELGNLGEFPAVHVEVIE
Ga0315904_104990374	F031792	GGAGG	MSYEPELNDPIFYAEEYEPPVKCFICGDTLDRDDIVWADEEGKIVKEGNDTAWCVSCLPSEGEGNE
Ga0315904_104990375	F005558	GGAG	MSKDLSWSELAELTHVTQVEHFSFCLCEDNEGQENPYADCPKGDENE
Ga0315904_104990376	F000821	AGGA	MQTVRKGTRMNKEYLEAKFDLCINQAEKNIQEEEIALAIANLRRANSALSQLFGFEEGDESE