Scaffold Ga0315904_10300292

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10300292
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1505
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F028460	Metagenome / Metatranscriptome	191	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_103002923	F093487	AGGAG	MAVAIKPLRRRRRTTQRGKPMNQSQRWGKVVTTMPVPEGNITTSEILVPEVEEVVEEVEETKAEVEE
Ga0315904_103002925	F006653	AGGAGG	MSDEQMSHKKEKPELTNKYRDNLKVDQLRAELDTIKVDLTNFVGALLQSGVVELVKDEEGNIIYKINKVVLVDESVQQD
Ga0315904_103002926	F028460	N/A	YGSPSNPPHRRAIHGKVSQLPALILTLGYDPSQGILKVAPVKNRFGAHTADGSKYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV