Scaffold Ga0315904_10215348

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10215348
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1871
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024101	Metagenome	207	Y
F033009	Metagenome / Metatranscriptome	178	Y
F072279	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_102153483	F072279	AGGA	MTYSRQHFQQVASILSQFKDEIPQTTFEEIVMEFGDLFLAYNERFDDAKFQAACGITWPTFVRL
Ga0315904_102153484	F024101	AGG	MSKEKPIHKMIEEVFDKQLDNDLIDEIVEERNFIVNTLKSWIETDEMWQQMVDNKEARKLFLTNMQMLFLTELENSTLIELATTKHGDE
Ga0315904_102153487	F033009	N/A	TQLWWAGATTQFGDFQKFYDVNLWTMESKNGKYASVILDGEMIKSWRCDGAWDLARKLAESHLLKREQLEQEGWVIA