Basic Information | |
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Taxon OID | 3300031951 Open in IMG/M |
Scaffold ID | Ga0315904_10215348 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1871 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024101 | Metagenome | 207 | Y |
F033009 | Metagenome / Metatranscriptome | 178 | Y |
F072279 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315904_102153483 | F072279 | AGGA | MTYSRQHFQQVASILSQFKDEIPQTTFEEIVMEFGDLFLAYNERFDDAKFQAACGITWPTFVRL |
Ga0315904_102153484 | F024101 | AGG | MSKEKPIHKMIEEVFDKQLDNDLIDEIVEERNFIVNTLKSWIETDEMWQQMVDNKEARKLFLTNMQMLFLTELENSTLIELATTKHGDE |
Ga0315904_102153487 | F033009 | N/A | TQLWWAGATTQFGDFQKFYDVNLWTMESKNGKYASVILDGEMIKSWRCDGAWDLARKLAESHLLKREQLEQEGWVIA |
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