Scaffold Ga0315904_10189571

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10189571
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales → Candidatus Nanopelagicaceae → Candidatus Planktophila → Candidatus Planktophila versatilis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007115	Metagenome / Metatranscriptome	357	Y
F043790	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_101895712	F007115	N/A	MKGTMAIRRGLRLPPSKEEKVAISIGKLLSDYSLDLESVGRYLATAQPYVVYRRAVEVLEATEYNKEVAEYREMGKYYGDGLF
Ga0315904_101895714	F043790	N/A	PVFPSLMWVWAFDIMKEIFDNYQIKDLAVNDYVDEAVPEGITLKQIFDKFWDDVDGFGLSMDSGGDIIEETIRDWMRDNNFLVSLEDDGWLNDV