Scaffold Ga0315904_10176965

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10176965
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F020342	Metagenome / Metatranscriptome	224	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_101769652	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRIPAITLTGAYLLDQCIGTWSGDETDEELHDQLKDIR
Ga0315904_101769654	F020342	N/A	MSAYVNYLNMFDRINLAACAQRRATDNLLDSNRWEGEYDTARLWMKYRLIKTTTHSYIDE
Ga0315904_101769655	F001120	N/A	MKKSHVSFDKTIAGFNVTERGVRSYSKSIKLGPLQVTLNARESGVRGTISIPGTGLSLPNIKLF
Ga0315904_101769656	F001165	N/A	MTDNTPRIPDSMDMQRLQAMQLIAKMKESAERHGIGFIGGFISPNGEKFVMTNMTDDNDINALMPEDLK