Scaffold Ga0315904_10089115

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10089115
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3276
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F007026	Metagenome	359	Y
F091979	Metagenome	107	N
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_100891152	F091979	AGG	MRSESVLMLIAGRYAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLVSVIRNESIPMQNKQAEIRMLDQMQRFSPEVKNVTG
Ga0315904_100891153	F007026	N/A	MEQTQKYPELTWTKNEYHQLQLALDALKNICNREDKRHQMDEHLDPHTRDVLDEVIGMLSDELDYDPTPSEPGEPPITADEMHSAAWKEHLAMHS
Ga0315904_100891157	F001807	N/A	MTVLAIEHTSFTDTHVTVTAVVDDMCLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDLHWQIVDTSDYDLDS
Ga0315904_100891158	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVITLTGAYMLDQCIGTWPGDETDEELLDQLKDIR