NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10089115

Scaffold Ga0315904_10089115


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10089115 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3276
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F091979Metagenome107N
F103180Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100891152F091979AGGMRSESVLMLIAGRYAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLVSVIRNESIPMQNKQAEIRMLDQMQRFSPEVKNVTG
Ga0315904_100891153F007026N/AMEQTQKYPELTWTKNEYHQLQLALDALKNICNREDKRHQMDEHLDPHTRDVLDEVIGMLSDELDYDPTPSEPGEPPITADEMHSAAWKEHLAMHS
Ga0315904_100891157F001807N/AMTVLAIEHTSFTDTHVTVTAVVDDMCLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDQLDLHWQIVDTSDYDLDS
Ga0315904_100891158F103180N/AMIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVITLTGAYMLDQCIGTWPGDETDEELLDQLKDIR

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