NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10077646

Scaffold Ga0315904_10077646


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10077646 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3569
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F081259Metagenome / Metatranscriptome114Y
F091391Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100776464F081259AGGAGMFKQFIEWLTKPQLTELEYYVSSRQPKNAADVEQLIKEFNYKRRLQCF
Ga0315904_100776465F023321AGGAGMFLNQPTIPSFFTWNDIQRKAEEITLRTIEFNKIVTDHAINYFDDVTGKQFTTYTEKAVNLNHNIAEDAKKIIKSEIKKSKA
Ga0315904_100776468F024533N/AMPIQKTCPRCGVTHTKRGEYCSRSCGNVRVHTAEDKKIRSKKLTEYHQTPEAAATRAKSAKFITAYNKNEEVNLVDMDDYAVNIPDVTDYIQEYDDTWNRAEKW
Ga0315904_100776469F091391N/AMADIYNFTPRPKREQNDNTELDRLRAKLLELHDARETIIKEIRYTKDAIKLLEKGEQ

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