NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10016062

Scaffold Ga0315904_10016062


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10016062 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9209
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F078427Metagenome / Metatranscriptome116Y
F097194Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315904_100160622F078427GGAMVKSKGGILKESLVAQISAYVYYNVQVISKLTTNAAFKNKFREVIFNQLEKDFGEYVDAQARVKPKTLHHVYEWNQVGDSQSRLFKINKLNTEGLGFSISYEFLPSKTFTSTEGNRRHVFVSKASVMEAGMPLKIAPRHSKRLVFESNGYKVFMPEGASVVVKRPGGVGVKNSFMMTYSRFFKSNLVNASIKKSGFQRLFNNSMSKALRVPADIRTVKYTFNPNTIAVQADAALTSAFGASL
Ga0315904_100160623F000258GGAGMTVNYKLDAMLELRKYIWTKLQAAEIFNPDDYYSDNIGETLVPIIPVQQIPDMNQFLSGKDHIVYDKIGVSYDTLWLICNEQILFTIYSTDVSKINEVRNFMIDEFRRMDESAKDVNLSANFNSEKFKFHSIYVDDMSPTEPSQELQGFYSADIILEIKYSRITNTSGRYT
Ga0315904_100160626F097194AGGLGTWRNYQDLEESLSMPELLQTIESMQEKERQDKIFLASLQGVDLRDEQEEKGPTFEDIRLKAMGIEATTDDVVSLQGSMAAEAGFGIGAGLGYSKE

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