Scaffold Ga0315904_10006319

Overview

Basic Information

• Taxon OID: 3300031951
• Scaffold ID: Ga0315904_10006319
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16232
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013630	Metagenome / Metatranscriptome	269	N
F028167	Metagenome / Metatranscriptome	192	N
F105069	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315904_1000631913	F013630	N/A	MSHITIGGASHPLLFNMNSLRNVMQLAGMENFADLNLQKDLAKSMDFALACAFYGILEGYEADGKKTPYPTIQKLGASVKRFTELSPALDGFTQAVSDFFSTEEPEGK
Ga0315904_1000631918	F028167	N/A	MAEASIDIVAGYDGFVRHGAATVTGVSYDALVPQEDTVFTSFTVTEENGTATNVLSARGMSGITFKQGVYLPAGKGNKITGFVTSSGSVIGY
Ga0315904_1000631923	F105069	GAGG	MKKLLEIFKGDNGQLSSKRFVGIIGAFVLFGTMAHNSMSPQEIAPSAELVAAVEW