NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315904_10001561

Scaffold Ga0315904_10001561


Overview

Basic Information
Taxon OID3300031951 Open in IMG/M
Scaffold IDGa0315904_10001561 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36600
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (49.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F012111Metagenome283N
F103133Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0315904_1000156118F000922GGAMPKEVWQKACSLYLAGMEWDAIADKLKVNKTTLCKRASLEGVTKVRKEMKAEFPSEISVKTEKSLEALSALVRSKLAADAASTLERIETYDLEGLKDEGLRETILASVAKRSALTFGWSETGEQASVSINLLGSMPDRSVELNVTSEQPKE
Ga0315904_1000156120F005388N/AMSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSTSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALSQIICS
Ga0315904_1000156139F004664GGAMSGYKILNEHNVIPGGWNYRVPETGIEIPAGSLPQLREFVRNHYAANAVKVPDNLDILITEYQCRNGADCSYDEIEIPKPKGLKSLQIGDVIRFSMSLIHGLTVGGGKVDQAEAIRRASICAGCQFNRKPLGCTGCNARVLKEAVRTLSQHGTTPLDDQLQSCEFCGCFIRSMVWFPIETLHKFTDATENANLPAHCWKKRPCTET
Ga0315904_1000156142F012111AGGMSERAPRRYTDGSVTFDGGIDAGVMPSEVDKNQVAFAVNANFREGFISPRPGFIQKDYDLCVTVTADNAEITADQTNVTADGWSEECYGPQGLTGTFQCALPYISDDGRTFILLMISGKVWLYNCAQNNAQNLTTSPDLENPSNLLDGWMVQAENFVVIQDGFSKPLIFNGTSLRRAKDDEIKTGRVMAYVNGRIWYALPNGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFSVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAIDGIRSFIIARRSFSDWGNTPISGEMTPIVENDQSSLLWASSAVVFDNRVLMTSQPRFNSEGVIHKAISVLDMELVTSMRKKAPPAWAGIWTGLNILQLVKTENAYGDNCFAIARGSDDSIQIWEITKSEKFDMNLSEIPKKEIEWQVQTRAYNFEVPFGLKRLDSGDLFIDRLEGDVSFNVTYRPDQYPGWIEWIDFAECATVTQCFDLCPITNFKPQYRPKMRFPTPSDAPCNATISTPARNLYEVQVMMNIIGYCRIKSLRVHAYDIQESSVGECRTVFPACTPLDVCDINPLTYTSE
Ga0315904_1000156144F005740GAGMKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLIDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFTQLTGVIREATNTASRLYEYDATALSELDLAVYDPDETLPQYRRSLLTDRCHNDEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAIQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0315904_100015619F103133AGGALDCRQLDCRSLKPYAREIMRYKIQLETPNGWSNLRESSDGGPYKTCFYPTRMDAVGAVEEFAELLESTRIVPANVPETENIYA

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