Scaffold Ga0308417_1003256

Overview

Basic Information

• Taxon OID: 3300031950
• Scaffold ID: Ga0308417_1003256
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10430
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016816	Metagenome / Metatranscriptome	244	Y
F029452	Metagenome / Metatranscriptome	188	Y
F050400	Metagenome / Metatranscriptome	145	N
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308417_10032562	F016816	GGAGG	MNTIYNPITGQWERLDDVLRPFPVIARDTRLIATNDTAPFVPAQGVVNIPDHTDIFGNTDSSRANIGIAVGNTSADVVVPDVWRIRRFIILCNRSGSGTTNVNIICVLWGRLLAPDGTPTESWRQVAVSTDIGSNSTPIRFLVPSSLAGVLGYDQYRITFRRDQTSDPAPELSLIRVYAE
Ga0308417_10032564	F050400	N/A	VITVNLYNRYYQPVLERILEPARAVLLLTTDGVYTFTGITPAPLPHNYPITNAIASKHYALPTPTAPPYPSYLRTSKPIAVELCVDTAQSYTIQYQHNGVSQPPITIPALPLPDYPLYQRTPIYPFAHNHLAGYLYDVRIVGSYQSGGMDIAIPNTHSGIITTVCIPLGDTTRLYSAYRNSSGEWKIIIRNPNGNELPNGTNVDTGVRVYVWSYYR
Ga0308417_10032567	F092114	GGAG	MRELVSITRHKMEQLLGDNPPKRDTWLLKCRRLREIVGNLPSNQIITTSIPEGHSNMLLINITIKAYAMMQLIRGTVIDFGDDTELFQPKFSEFLSANELALRDAILQRLVVGIGAVCVVGDKQHGWRLQSISPTDLWWDCTTGDVMQPKWIARGYRDSDGNDYREVWYADVYHRYKVGSTDVETHTNPYGVIPIVLLPAHHIPDTVYPIGDVELACPQQFILDEIRRTYLNMARRGAGFFAVKRSSIDESELSRLQNPDEVYILVNEQDAIMPIPTPAPNPEWQALETLAKQDMDALMGISEYVRGVLPTGRAKYATEVVAAVAGQTVRIQAEWYNTKVALERLAMVYYKLHNPTGTAIPRALEDSLGSVNQLMRAEMVGNAPSGNIPVAQSV
Ga0308417_10032568	F029452	GGAG	MIVYEYRCAECGWITAVSRWVDQRDVCPRCERCGKLTQRVFPPRAQIVVPRAFSLECAREAAKLVLPQTEEEKRYWDTFGIMDDDGE