NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214473_10630620

Scaffold Ga0214473_10630620


Overview

Basic Information
Taxon OID3300031949 Open in IMG/M
Scaffold IDGa0214473_10630620 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1178
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)197
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009707Metagenome / Metatranscriptome314Y
F061118Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0214473_106306201F061118N/AQGSEIVVTAPGSDYVMTYHKPADSLKLLAKSFPRKEDRRVTMTLASFLTAAYTLANDKARELGWIT
Ga0214473_106306202F009707GAGMTEQLDLNSAKEWSKKDLFSLRNRIEHGRTVAHVATFLMRTETEIREKAAELGLTLPD

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