Scaffold Ga0310913_10159023

Overview

Basic Information

• Taxon OID: 3300031945
• Scaffold ID: Ga0310913_10159023
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1565
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054221	Metagenome	140	Y
F084789	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310913_101590231	F054221	N/A	VRSIPAAVALLMVGLTISSIGARFFKSGSTSETLIFESELPSNVPDLRSGPSPKMAEGVLRCEDAGAVVINIDGADYAVNGMASRLYPPIQRVWNSSTHPENDIDRIIVRGLTLCDWGSKSHSTVQASVN
Ga0310913_101590234	F084789	N/A	MSEEHQPRICSQCDLPLIELDAYGERLCGSVGCNNWQALDSGEWRHLSDDDIAALKGMV