NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310916_10165742

Scaffold Ga0310916_10165742


Overview

Basic Information
Taxon OID3300031942 Open in IMG/M
Scaffold IDGa0310916_10165742 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1833
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001161Metagenome / Metatranscriptome761Y
F003243Metagenome / Metatranscriptome498Y
F020965Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0310916_101657421F003243AGGAMLAPLFGYFFSMITMLTAVVVVLTSFSNISTLGKGRHHLRPPVINRTVTVDNAARQSPVAQETSPAVVSTVKAGDIKKSKHHKLKVVARQRDNYGFRNAVGYAEETRYGPRGLFFQ
Ga0310916_101657423F020965GAGGMKNPLVIALVAVVLITVSALAVMNKACKSSQHAWCAPMSS
Ga0310916_101657424F001161N/AMPKEDNNHTFEGCEPSSLFRDFAAECIELAQAASSPEKRVLYAKMASVWHQMAQRWEKKG
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