Scaffold Ga0308175_100037411

Overview

Basic Information

• Taxon OID: 3300031938
• Scaffold ID: Ga0308175_100037411
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4082
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F081177	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308175_1000374113	F008444	AGAAGG	MPVPHAYTMKAGTKSKLLLVYATSADSTSGKVGLGKDLSAGSAAYIREGDAAARQVPIVKGRLGEWASGSLAEVDPELLPGVYQFGAPDDMVTEGSARAVLLLRFPEAVIKPIEIHLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELELGEQAEKELAAKMNVKKEP
Ga0308175_1000374114	F010880	AGAAGG	MSYALKKGTTSKILLIYALDGTDMRLGKTGLSARTPDSSAAYIREGESQARRITLIEGKLGEHRPGSFVEVDSKLLPGVYQFGVPDEMLAAGAQTVTLMLKFPGAVIEPISIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGDAR
Ga0308175_1000374115	F081177	N/A	MLDESKQVGNMAEAAARAAQPYRRHIVGLPLQRSLFGQAARAATKIGLPGLTSELDFPARLDENGDLFLDGSQVATLSKALPAWFTPETLELMHTRHAAACDALVNASENAARGAASLDRAARELSQDLADKMALV