Scaffold Ga0308175_100000053

Overview

Basic Information

• Taxon OID: 3300031938
• Scaffold ID: Ga0308175_100000053
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92571
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (67.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011047	Metagenome / Metatranscriptome	296	Y
F012379	Metagenome / Metatranscriptome	281	Y
F023336	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308175_10000005327	F011047	N/A	MKGIRYALRNFTALSVKEHLRSQIEREDGGAELTPKEVALVRFAVDRSEQLKELAERSPD
Ga0308175_10000005329	F012379	GAG	MVTAAASPHVFWVVDDPTTQERIRRWPVGPALLEMLGELNSDVRDALDDERSWLIRNGYPADLPLPALWWAPRARAGLVAVSDTSPARATV
Ga0308175_10000005360	F023336	AGCAG	MKRANRMIADMHRLEAPLKTVHDHGPTKLELELNNFMLSIGVLPVFQRELLIREAKAAVGLCHDCFEALESMEPAVQTRAGESPCAPGV