Scaffold Ga0306921_11661308

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0306921_11661308

Scaffold Ga0306921_11661308

Overview

Basic Information
Taxon OID	3300031912 Open in IMG/M
Scaffold ID	Ga0306921_11661308 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	692
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005651	Metagenome / Metatranscriptome	394	Y
F025580	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306921_116613081	F025580	N/A	VGVEGSPSMGVTITSSDPLRGGRPEWPDGTAEHISGQGIFVEEIRKALARRGIGFPRVAGETHALAGHDEASQQAGLESTLEG
Ga0306921_116613082	F005651	GGAGG	MKPDERSFRIMVVADRYVNPPSDGLDAVAVAAQTGWGVMQLPADDYPPEVAEPLLAEVAEQMEEFARHGYGFVLVGERAGLAEALATVGVPLPDAISPGTAAQLAEFLAGRPAPRANRDTDQPAG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.