NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307412_11233499

Scaffold Ga0307412_11233499


Overview

Basic Information
Taxon OID3300031911 Open in IMG/M
Scaffold IDGa0307412_11233499 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057183Metagenome136N
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307412_112334991F057183N/ADLGVRRLLRRQGLAAPPFGSAFVWLAEGEGAAGGWFARVTGLPGRGSLIRFGHPGAPAFQLAAADPEAAPALPAALEPALRELCEGLGWSVVRLVEDALPALDPVRRRIPGADDEGAFLAWAYTLAVDEALDRLSARGLLTPPAGDVMAVRVSDPALAGAAR
Ga0307412_112334992F064462AGGAGGMSPAPVVLAILVVLATLAAPLAADCRRRLATRRFDAVYERNLLRRTAAVSVRPRRGRGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.