Scaffold Ga0302322_100401725

Overview

Basic Information

• Taxon OID: 3300031902
• Scaffold ID: Ga0302322_100401725
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1572
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F017088	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302322_1004017252	F002824	N/A	MTKLTNTALKPGNGKPTAEEMAVVKTILNPVENKTEEKKPVLQIEAEKPVIPSPEPKKEMTMMEKILKIENLQLVIEKRAKLVQTRSELERFQTASNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLKSSFDASIADVEKKINF
Ga0302322_1004017254	F017088	N/A	QEHEHFIMSHTHYSGDPRQITARFSSTCHTCGKLIKKGETIIYWPNGKKAGHYDCDIQDYRQSIASFEDEDRYNRIYH