Scaffold Ga0307406_10166978

Overview

Basic Information

• Taxon OID: 3300031901
• Scaffold ID: Ga0307406_10166978
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1589
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005142	Metagenome	410	Y
F007136	Metagenome	357	Y
F012851	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307406_101669781	F012851	GGAGG	MSVCSGIRADGGRCQAQAMRSSEWCINHHPDRTELRRRRASKGGRRGGRGRPIAELGALRDENAEIRRRLLEGELPPNVAAVAVQSINTDIRAVGATLKAREQEEITERLTELETLLVHDQAAFSAMDRCS
Ga0307406_101669784	F005142	GGAG	LEVLEAMTAPTVDGQTSLPKRSGPKGLLPSTWLARTLRVSYVDCYGGGQEASGTLLDLYPAGPILNIGGAKTLLSWDRLAVVELVED
Ga0307406_101669785	F007136	GGAGG	MVGSINARTLDYFGLLVGASIVALCSGVVATLCVKYELRWLAWFWAASFFGSALVAAYCLVKLL