NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315312_1000003

Scaffold Ga0315312_1000003


Overview

Basic Information
Taxon OID3300031898 Open in IMG/M
Scaffold IDGa0315312_1000003 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)1943968
Total Scaffold Genes2106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1474 (69.99%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F007209Metagenome355Y
F008290Metagenome335Y
F012730Metagenome278Y
F015693Metagenome252Y
F021710Metagenome217Y
F029354Metagenome188Y
F034062Metagenome175Y
F038454Metagenome166Y
F039458Metagenome163Y
F053031Metagenome / Metatranscriptome141Y
F058600Metagenome134Y
F104376Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315312_1000003106F006410GAGGVLSEEPRIEPEKAKEMQERAKERSLILKEIKNQGPSTLDELAKATGIEKEKLFRHIIAMRQFGKIAIAGERDDQLVYGLPEGEEKS
Ga0315312_1000003109F012730N/ALRRALSTVEYEEMKGKTFTEIRVDEKLCEVCDKPLRTEEKTLKTIQIIDYDSYSNLLTRQRAHDRVEVDLEENKIYLYHHDYPGDIHPGCIEKL
Ga0315312_10000031180F038454AGGAGGMPEENEEARRIGYKNGFNDGYKKGYDKGLEEGYEKAKRKNSLPPVQFLRIPCECGTLNFHPIFENRLVINEDEERRCHGCGKIVQRDNILSCYSRLQYNNRT
Ga0315312_1000003149F029354GAGGMSEFEEKFIKPIVNASYPGTLAALSLTVLQVTGLSGVPTPFSLRIALLLGAAAFLLSAFSIFFYSIYPTRKKLWTATAITFLIGLFCSIVSVFLLFVI
Ga0315312_10000031643F034062GAGMGLLIKEAERMGLFKKFKAPQAKIELKLDEVAYEATDKFTGRIVVDPQEEISLNEFRLEFGGNRKIKWKKGFSSYSSTSSLETKKISVGGPVKLQKGQHYEHPFQIDIPQYSRPDPFTEIEVKVKGVATVEGRPDLTHEVKPVINFPYVIECDRDYGGCGFITQPLSEPVKACPKCSMNLEEVWNREYSDEARRAASGQKRF
Ga0315312_1000003291F058600AGGALDKIDKSLLILPLLPLLDLSSTLFSLGFGGEEVGILARPILENYGSLGLLMLAASASVMFLVFMQVVIRIKNLFIRELRFRWMWYVLAIPIYWIFLLEATYVSTVILNLLIPLSLGLTEAFIFRVLLVCTYFACVSGLTLPQMRQLPRF
Ga0315312_1000003471F007209GGCGGMLRYRYSLTNEGERRAAKNEFYLQKTPKYKGYTEKIFRALYGSDPLTIREISYYTGIDRRSVNGVITFNVMAGYIRRIAI
Ga0315312_1000003517F039458GGAMTVVVTGSERAVKKTAEEQIKALVKKHSFPPIKVIIPILEKAGRGEQELTAQIYYTYATIAEGTTRILRLKDKDMKTVAKVFEIVISLEGVKLQPIELSESRFSFNLPDCPMLHVGKNVSFNVKSKFCDLICTAGSRGLMDTILGPQRGTCTWNKALIRGADKCTTTFELVKPK
Ga0315312_1000003519F039458N/AVKKTVEERIRALFAEHSIPPMEVVIPILEKTGRGEQELTAQVYNTYTSLAEGIKEILKLKDKNMKTLAKVYEMVYGISGEKFEPLELTDSKFSSHLSDCPLLYVGKDVSLGVKSKFCDLICTAGSKALMDTVLSPHKGNCTWDKALIRGAGKCTVVFELVKTT
Ga0315312_1000003853F008290GAGGMPERIKMKIGRASYVQRVGEKDYLKKRSRIESVPMTKLVKLSRLGGRTWRLLQQGNDFFLILEALTWEEEEKAIKKGRYP
Ga0315312_1000003854F015693AGGTGGMTKMIMYFNLKSGVSEEEFVNKAKELLGYLEGKVEGLGTGKLYRHDYFGANPRMYQMHMEMRDFGALDRLAAFIKKDAKAARLFQENWWKLIDMDTHYDEFVREIPL
Ga0315312_1000003862F021710GAGGMRRGRAHPSLTRFRLCKEFSWTPEQLNRQSAKTVEEFVVILNEMDRQTEEEVEKAKRGARYVG
Ga0315312_1000003867F104376AGGAGGMPLAWDEKARVEPGKETTIVSYQVGEGRLVKLDGFIAFGTCAAIYRLYADGEVKASYMTSEADRNAYVIFRTEHVTGPKTIAVKVLHFIPAAPSEGQDFEGTILGG
Ga0315312_1000003924F053031GGAGMEKDPILVIDKPDFVVSLHKDLIEVDLKEGGKAKLEHAIEKDPLLRKTLGFVLQTTIPSDVELCDIKSCEVDDKGQLKLVIPRHVDIVLPLGVDDANRLAYELRDLIPLAKTRKKAYRRRVPLHTWWPYYVVVSGSPSR

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