Scaffold Ga0315312_1000003

Overview

Basic Information

• Taxon OID: 3300031898
• Scaffold ID: Ga0315312_1000003
• Source Dataset Name: Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1943968
• Total Scaffold Genes: 2106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1474 (69.99%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location

• Location Name: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.7726
  • Long. (^o): 121.4938
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006410	Metagenome	374	Y
F007209	Metagenome	355	Y
F008290	Metagenome	335	Y
F012730	Metagenome	278	Y
F015693	Metagenome	252	Y
F021710	Metagenome	217	Y
F029354	Metagenome	188	Y
F034062	Metagenome	175	Y
F038454	Metagenome	166	Y
F039458	Metagenome	163	Y
F053031	Metagenome / Metatranscriptome	141	Y
F058600	Metagenome	134	Y
F104376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315312_1000003106	F006410	GAGG	VLSEEPRIEPEKAKEMQERAKERSLILKEIKNQGPSTLDELAKATGIEKEKLFRHIIAMRQFGKIAIAGERDDQLVYGLPEGEEKS
Ga0315312_1000003109	F012730	N/A	LRRALSTVEYEEMKGKTFTEIRVDEKLCEVCDKPLRTEEKTLKTIQIIDYDSYSNLLTRQRAHDRVEVDLEENKIYLYHHDYPGDIHPGCIEKL
Ga0315312_10000031180	F038454	AGGAGG	MPEENEEARRIGYKNGFNDGYKKGYDKGLEEGYEKAKRKNSLPPVQFLRIPCECGTLNFHPIFENRLVINEDEERRCHGCGKIVQRDNILSCYSRLQYNNRT
Ga0315312_1000003149	F029354	GAGG	MSEFEEKFIKPIVNASYPGTLAALSLTVLQVTGLSGVPTPFSLRIALLLGAAAFLLSAFSIFFYSIYPTRKKLWTATAITFLIGLFCSIVSVFLLFVI
Ga0315312_10000031643	F034062	GAG	MGLLIKEAERMGLFKKFKAPQAKIELKLDEVAYEATDKFTGRIVVDPQEEISLNEFRLEFGGNRKIKWKKGFSSYSSTSSLETKKISVGGPVKLQKGQHYEHPFQIDIPQYSRPDPFTEIEVKVKGVATVEGRPDLTHEVKPVINFPYVIECDRDYGGCGFITQPLSEPVKACPKCSMNLEEVWNREYSDEARRAASGQKRF
Ga0315312_1000003291	F058600	AGGA	LDKIDKSLLILPLLPLLDLSSTLFSLGFGGEEVGILARPILENYGSLGLLMLAASASVMFLVFMQVVIRIKNLFIRELRFRWMWYVLAIPIYWIFLLEATYVSTVILNLLIPLSLGLTEAFIFRVLLVCTYFACVSGLTLPQMRQLPRF
Ga0315312_1000003471	F007209	GGCGG	MLRYRYSLTNEGERRAAKNEFYLQKTPKYKGYTEKIFRALYGSDPLTIREISYYTGIDRRSVNGVITFNVMAGYIRRIAI
Ga0315312_1000003517	F039458	GGA	MTVVVTGSERAVKKTAEEQIKALVKKHSFPPIKVIIPILEKAGRGEQELTAQIYYTYATIAEGTTRILRLKDKDMKTVAKVFEIVISLEGVKLQPIELSESRFSFNLPDCPMLHVGKNVSFNVKSKFCDLICTAGSRGLMDTILGPQRGTCTWNKALIRGADKCTTTFELVKPK
Ga0315312_1000003519	F039458	N/A	VKKTVEERIRALFAEHSIPPMEVVIPILEKTGRGEQELTAQVYNTYTSLAEGIKEILKLKDKNMKTLAKVYEMVYGISGEKFEPLELTDSKFSSHLSDCPLLYVGKDVSLGVKSKFCDLICTAGSKALMDTVLSPHKGNCTWDKALIRGAGKCTVVFELVKTT
Ga0315312_1000003853	F008290	GAGG	MPERIKMKIGRASYVQRVGEKDYLKKRSRIESVPMTKLVKLSRLGGRTWRLLQQGNDFFLILEALTWEEEEKAIKKGRYP
Ga0315312_1000003854	F015693	AGGTGG	MTKMIMYFNLKSGVSEEEFVNKAKELLGYLEGKVEGLGTGKLYRHDYFGANPRMYQMHMEMRDFGALDRLAAFIKKDAKAARLFQENWWKLIDMDTHYDEFVREIPL
Ga0315312_1000003862	F021710	GAGG	MRRGRAHPSLTRFRLCKEFSWTPEQLNRQSAKTVEEFVVILNEMDRQTEEEVEKAKRGARYVG
Ga0315312_1000003867	F104376	AGGAGG	MPLAWDEKARVEPGKETTIVSYQVGEGRLVKLDGFIAFGTCAAIYRLYADGEVKASYMTSEADRNAYVIFRTEHVTGPKTIAVKVLHFIPAAPSEGQDFEGTILGG
Ga0315312_1000003924	F053031	GGAG	MEKDPILVIDKPDFVVSLHKDLIEVDLKEGGKAKLEHAIEKDPLLRKTLGFVLQTTIPSDVELCDIKSCEVDDKGQLKLVIPRHVDIVLPLGVDDANRLAYELRDLIPLAKTRKKAYRRRVPLHTWWPYYVVVSGSPSR