Scaffold Ga0318522_10070129

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0318522_10070129

Scaffold Ga0318522_10070129

Overview

Basic Information
Taxon OID	3300031894 Open in IMG/M
Scaffold ID	Ga0318522_10070129 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1267
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000641	Metagenome / Metatranscriptome	966	Y
F033581	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318522_100701292	F033581	AGGAGG	MTSNAENEKRGELAGRADGRCWAEHTTEHDDLRRVAAIEFQPGLDCYKALCDAVDPDHELSEMEFKRYLFGDESAVLTNEYLAAFIEGARQFFLEGAPKI
Ga0318522_100701293	F000641	AGG	MPPNFALLDISQPEVARLIAAMVQARDAVEQGTWSHPQEPTGEEWWADVLADPRARKRERRTDLAVKQAFYRLADEKHDIIFVACSKCDWRAAFSRDDLIASHGADYPMPNLLDQLAAPSCSRLGSHWDRCGVHYVEPIETDRPDE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.