NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315318_10527179

Scaffold Ga0315318_10527179


Overview

Basic Information
Taxon OID3300031886 Open in IMG/M
Scaffold IDGa0315318_10527179 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → Candidatus Gastranaerophilales → unclassified Candidatus Gastranaerophilales → Candidatus Gastranaerophilales bacterium HUM_18(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033597Metagenome177Y
F064096Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0315318_105271791F064096N/AVAGITERGRSFTTRQEQQLTNTLKWHDKVWILDSQWVDQASLVKSEALLKQGERVFIWPEKFGKRFKDFNDIAIACSIDEIKWDFIQKNTFEGLEGIVRLSEIKKYRNYTYLK
Ga0315318_105271792F033597N/ATDVEDFDVDIDVDETIVDDDPNVKAARAVGERNEAMRAKLEGWVGEVEQFLEYLNGSTPDSIQSILAVAEPDTIFDQMKSSEQRKIARVATELAALNESFKGYLAQTGNSHFKYV

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