Scaffold Ga0315318_10321472

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315318_10321472

Scaffold Ga0315318_10321472

Overview

Basic Information
Taxon OID	3300031886 Open in IMG/M
Scaffold ID	Ga0315318_10321472 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	887
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016730	Metagenome / Metatranscriptome	245	Y
F089044	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315318_103214722	F016730	AGGAG	MLQALKKWCIEVSKELCNETVSTAGTICDETKKANASFVKAIMDSV
Ga0315318_103214723	F089044	AGGAG	MWKPNIKGLTDKVKSAGSKIAEGSKGLGSKAKNIGKSSVSSVKGAAKKLNPFKK

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