Scaffold Ga0315285_10045800

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10045800
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4127
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023059	Metagenome	211	Y
F041645	Metagenome	159	Y
F049401	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_100458002	F049401	AGG	MLTLILGGGLVLSSCASTSYTYTAPSPADIPELIMEWDRLERSLGLVKPEFREQYAKALKALSNAIAEQERWRSRAENK
Ga0315285_100458003	F023059	AGAAG	MFEAAIASLAGVVGILLWWLKNRAKTRTERDDAEIEYRRRVRDADLDSWWRSRP
Ga0315285_100458008	F041645	N/A	RQNFNKEINGLETLIEAYAIKTSNRASVVPEKDTLHSSFSSASTTYPRMVVESVATEEEDGGITSMLVTFVGLTSSTGLPPAVIRLIPTAGEGVYGPPLTIEVEYVTDVSVTQFLAGQLSNNLNQRATLFAETIKMPAFINGTAMPQDPRPAFSSAPQSGGGVIENYSGYCYLSKSCERRGLFLVARDTFHEVQQLAVITR