Scaffold Ga0315285_10021315

Overview

Basic Information

• Taxon OID: 3300031885
• Scaffold ID: Ga0315285_10021315
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6446
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018653	Metagenome	234	Y
F044303	Metagenome	154	Y
F060850	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315285_1002131514	F044303	GGGGG	MTRKHRLAFNALKKINAPVYERCDIENFQISAEYNFDPKYGNTLWADYYDGQTIGSDWDFGVNPLITETLNKYGLHTEWINAGELGVYE
Ga0315285_100213152	F018653	GAG	MASQYKYILIDEFGGAVRKFFSKVEATPYLTGETRLEPLPKVPKTNLYQQALLFCGEALF
Ga0315285_1002131521	F060850	AGG	MSYISNATIDNAVDLIINTRDFCGDEKRAIKDFCSDERIADWQKVWRIANFRANALWNQCQKDAGVNPKYTF