Scaffold Ga0316220_1027000

Overview

Basic Information

• Taxon OID: 3300031884
• Scaffold ID: Ga0316220_1027000
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029962	Metagenome / Metatranscriptome	186	N
F030591	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316220_10270003	F029962	AGGAG	MKWISVCGIGVVLMLAGCKTAEKSQILTAFQNAGGGDVAQATPQGISSFLAQHEDLRKQLTPLCNAQKAKAPADWSTSDEGRICSANERANFFGKPQLKSDGVKF
Ga0316220_10270004	F030591	GGA	MVRRQKLILLAAVAFASAATAHAQAPVDVGGTFQQIEQ