NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306919_10160822

Scaffold Ga0306919_10160822


Overview

Basic Information
Taxon OID3300031879 Open in IMG/M
Scaffold IDGa0306919_10160822 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001529Metagenome / Metatranscriptome677Y
F005858Metagenome / Metatranscriptome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0306919_101608221F001529N/AMGTAKMDRRDRELLNKQMRVLSAPRNDGVIAVMLAAMFLAGIALGSVVFPRQIEPTQIAWME
Ga0306919_101608222F005858GGAGMSHQYKAGDVVTVFQISPANELVIEGKATIRKRVAEVDEQYRVEFANKPGVTCQRFVDSWGQDDPEKYVKDFNRRFARRRAQHSSF

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