NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308404_1004044

Scaffold Ga0308404_1004044


Overview

Basic Information
Taxon OID3300031878 Open in IMG/M
Scaffold IDGa0308404_1004044 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3885
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F063723Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0308404_10040445F002372AGGAGMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVREDAPPIVLRSAYVQANRQWERHSEFAMRVVEAALQLVHEYRADPSMGGSDSWV
Ga0308404_10040446F002795GGAGGMATNSDGRLVLRGMVAAYREFTSRKDGRLFRVVTVFGDLMVGESVICTVDGYDVFVDSPDYARGEMVELPARLQFARDSSGRPVVKLYVDEGVR
Ga0308404_10040447F008135AGGAGGMRAVIDPRTERVLTEAGAGIARVLDDRQRRAVALAIEACWYIVAALPPDGSVTFGDVVRLLRWFARGFSEGVEVDDGDE
Ga0308404_10040448F002229GGAGGMVTLLTFDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLTSGIGWWTVIGGRRVTATLAAIGWCWVADGLGARGYWSPALACIPGEVRALCGGCGGCVDDDDGGDEE
Ga0308404_10040449F063723N/AVWDEVQVSLDSREWASEAARCLTRDMILWGKRGVICVYTSPSFQTVDVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGAAPGDTLAILPSPAPALAPARRRG
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