NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315297_10387242

Scaffold Ga0315297_10387242


Overview

Basic Information
Taxon OID3300031873 Open in IMG/M
Scaffold IDGa0315297_10387242 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1172
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.536Long. (o)-110.4254Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007361Metagenome / Metatranscriptome352N
F088747Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0315297_103872422F007361GGAMSVLFSLEGDCIGLHEQGATDSNWQKSIEDYRNRYKYVADCSTYGYLPKAIVHDSVKVYVKKDAESSAKECTERFGYEVHLPSVQMLREYADKWAASHSVMTIEEGELFKVDTLRRIWIHCFHNERAFPEEKAVRLVTMNIQRHEPEKVFSIENGNRLVKEVF
Ga0315297_103872423F088747AGGAGGMGAILGAAAIAGGSSLIGGLLSKGSKPKVPAFKPIDFAAEQKQAIQQNIGSLESATELATKTTAAEQSQLEAQLRRAIPGYDQLISQAGKNIGANLRGEVSQDVASQLQRSAAGRALGGGYGAGSGAG
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