Scaffold Ga0326511_10008497

Overview

Basic Information

• Taxon OID: 3300031867
• Scaffold ID: Ga0326511_10008497
• Source Dataset Name: Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8095
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5357
  • Long. (^o): -121.7593

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326511_1000849710	F057035	N/A	MTEQEFLEKRIPIWLEGDDLHVSTPSKNDGNDMHAFLSKKYGYSWMFAIRGYYWPGSHVMLYIGDYECPNCTTLVVPYLFSYFSDVKYIGFGCNKGKVGEIWPPKIIMTRSMNCLKDDIRSI
Ga0326511_100084974	F075545	AGGA	MIQLVVNVNLLREIEDSKLIGAYARHMYNDESDLTDEVKIKDNLIQLLDWDKNGDNGLGFYCSKFESIKRKDWEFLINFIKDNSHIIKEYGYYPAKEKKLESIKVVNDAIEAKEQHNIKRFTDENYKVSGRGKKAKPCIYEGKEYKSRQECMYKEGLTKYQLWTYLRETNQI
Ga0326511_100084977	F079361	N/A	MIYFTIAKNECGYLIDSISDCYEVLKAKFPDEKIYKSDKAIVSIYVIKDELDEYGKDQDNIEDNNSN
Ga0326511_100084978	F064301	GGA	MGKTKTTSKIIIPTKVPPVWQIGILFPDGKKIAKAKCTLNEIFETYFMSLDKYSSKGYSPEQLLELYQKTYYNKGIKVQINYIDSWGHLWKGKVAWPRESKFIEYLNKRLNEINI